ebanks 2e89d5e46f That was an annoying bug to find. Mark, I want a beer. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@293 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-03 20:05:24 +00:00
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cmdLine	Hack to work around an Apache CLI bug, where core arguments couldn't be commingled with walker arguments. These arguments can commingle now. Everybody into the pool.	2009-04-01 20:56:42 +00:00
FastaSequenceFile2.java	moved a bunch of files over to the logging system. In some cases I ballparked the severity level of an error, so if you see something wrong feel free to make changes.	2009-03-27 14:02:55 +00:00
FileProgressTracker.java	moved a bunch of files over to the logging system. In some cases I ballparked the severity level of an error, so if you see something wrong feel free to make changes.	2009-03-27 14:02:55 +00:00
GenomeLoc.java	That was an annoying bug to find. Mark, I want a beer.	2009-04-03 20:05:24 +00:00
JVMUtils.java	Refactor common functionality out of WalkerManager and into JVMUtils and PathUtils. Add support for loading walkers from a jar.	2009-03-30 23:20:55 +00:00
Pair.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
PathUtils.java	Refactor common functionality out of WalkerManager and into JVMUtils and PathUtils. Add support for loading walkers from a jar.	2009-03-30 23:20:55 +00:00
Predicate.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
PrimitivePair.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
QualityUtils.java	JavaDocs!	2009-04-03 19:19:17 +00:00
RefHanger.java	moved a bunch of files over to the logging system. In some cases I ballparked the severity level of an error, so if you see something wrong feel free to make changes.	2009-03-27 14:02:55 +00:00
Utils.java	1. modifed by read traversals with indexes to be more general	2009-04-03 18:24:08 +00:00
xReadLines.java	Documentation and cleanup of xReadLines.	2009-03-25 15:36:21 +00:00