kiran f0f94b6c72 A class that represents the model parameters for all of the Gaussian models at a given cycle. Handles the accumulation of parameter initialization data and provides for efficient computation of base probability distribution. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@272 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-02 22:07:47 +00:00
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gatk	Expose the underlying SAM reader to the walkers.	2009-04-02 21:38:00 +00:00
playground	A class that represents the model parameters for all of the Gaussian models at a given cycle. Handles the accumulation of parameter initialization data and provides for efficient computation of base probability distribution.	2009-04-02 22:07:47 +00:00
utils	A class with some static methods that aid the manipulation of quality scores and probabilities (including a method to compress a base and quality score into a byte for SAM output.	2009-04-02 22:06:15 +00:00