Eric Banks f0bd1b5ae5 Okay, all public->protected dependencies are gone except for the BQSR arguments. I'll need to think through this but should be able to make that work too.		2013-01-08 15:46:32 -05:00
..
src/org/broadinstitute/sting	Okay, all public->protected dependencies are gone except for the BQSR arguments. I'll need to think through this but should be able to make that work too.	2013-01-08 15:46:32 -05:00
test/org/broadinstitute/sting	Moving integration tests to protected	2013-01-08 09:34:08 -05:00