Khalid Shakir 26ba4c11aa Minor fixups for previous commit once tests (only runnable at Broad) were run. ... Fixed off by one error in size calculation IntervalUtils.scatterContigIntervals(). In test for fewer files than intervals, adjusted expected intervals. In test for more files than intervals, adjusted expected exception.		2014-10-22 17:37:37 +08:00
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VectorPairHMM	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
external-example	Various fixes for package tests.	2014-09-04 15:30:31 -04:00
gatk-engine	Do not process a variant if it is too large (> readLength), and log an error	2014-10-20 15:51:32 -04:00
gatk-queue	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00
gatk-queue-extensions-generator	Moved arguments controlling options in output files into the engine	2014-09-05 21:18:11 -04:00
gatk-queue-extensions-public	Updated license information	2014-10-14 17:10:12 -04:00
gatk-root	Added -writeFullFormat engine-level argument	2014-09-17 08:25:27 -04:00
gatk-tools-public	Minor fixups for previous commit once tests (only runnable at Broad) were run.	2014-10-22 17:37:37 +08:00
gatk-utils	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00
gsalib	Changed license of gsalib R package from BSD to MIT	2014-10-16 21:37:07 -04:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Various fixes for package tests.	2014-09-04 15:30:31 -04:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
repo	Added -writeFullFormat engine-level argument	2014-09-17 08:25:27 -04:00
src/main/scripts/shell	For now, executing the delete_maven_links.sh just ahead of creating the symbolic links during the process-test-resources phase.	2014-06-25 02:32:15 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00