gatk-3.8/analysis/depristo/distributedGATK
depristo be697d96f9 An apparently robust implementation of the file locking for distributed computation, using Lucene's file creation locking approach. It is worth trying out for those with large-scale, high-cost data sets. Details and discussion at group meeting on Wednesday. Some cleanup still needed.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5079 348d0f76-0448-11de-a6fe-93d51630548a
2011-01-26 13:45:40 +00:00
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commands.R V3 of the distributed GATK. High-efficiency implementation. Support for status tracking for debugging and display. Still not safe for production use due to NFS filelock problem. V4 will use alternative file locking mechanism 2011-01-24 16:45:07 +00:00
distributedGATKMetrics.py continuing to push to get right answers for long-running jobs 2011-01-22 15:02:02 +00:00
distributedGATKPerformance.scala An apparently robust implementation of the file locking for distributed computation, using Lucene's file creation locking approach. It is worth trying out for those with large-scale, high-cost data sets. Details and discussion at group meeting on Wednesday. Some cleanup still needed. 2011-01-26 13:45:40 +00:00
getToTime.csh Distributed GATK analysis scripts 2011-01-21 22:09:07 +00:00
model.R A new top-level directory to hold analysis scripts associated with specific analyses 2011-01-21 18:40:02 +00:00
runqueue.csh continuing to push to get right answers for long-running jobs 2011-01-22 15:02:02 +00:00