gatk3的最后一个经典版本3.8

andrewk efd0fd1f0a Short python script that takes paired-end BAMs and aligns them with BWA. Referenced in GSA wiki tutorial ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1351 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-31 00:04:10 +00:00
R	Updated python files	2009-07-07 14:15:39 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	moved to wiki	2009-07-22 16:35:23 +00:00
java	Removed custom output stream for file and replaced with the standard out PrintStream	2009-07-30 22:36:42 +00:00
packages	Added indel cleaner and quality scores recalibrator to the GATK package.	2009-07-24 16:20:38 +00:00
perl	sortByRef now supports x:y location syntax	2009-07-07 16:42:40 +00:00
python	Short python script that takes paired-end BAMs and aligns them with BWA. Referenced in GSA wiki tutorial	2009-07-31 00:04:10 +00:00
settings	Switched to Reflections (http://code.google.com/p/reflections/) project for	2009-07-21 18:32:22 +00:00
shell	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
testdata	Derive examples from real data.	2009-07-10 04:21:37 +00:00
build.xml	Exclude secondary base caller code from playground jar. Still TODO: figure	2009-07-30 21:02:46 +00:00
ivy.xml	Switched to Reflections (http://code.google.com/p/reflections/) project for	2009-07-21 18:32:22 +00:00