Khalid Shakir b090751f62 Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths. ... Updates to HybridSelectionPipeline: - Added annotations back via snpEff - Minor updates to VQSR paths and lowered memory		2011-09-27 14:33:57 -04:00
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qscript/org/broadinstitute/sting/queue/qscripts	Fixed issue reported by chartl where cloned functions lost tags on @Inputs.	2011-09-16 12:46:07 -04:00
src/org/broadinstitute/sting/queue	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
test/org/broadinstitute/sting/queue	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00