Khalid Shakir b090751f62 Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths. ... Updates to HybridSelectionPipeline: - Added annotations back via snpEff - Minor updates to VQSR paths and lowered memory		2011-09-27 14:33:57 -04:00
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Aligner.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
AnalyzeCovariates.xml	Fix the AnalayzeCovariates packaging.	2011-09-22 11:55:40 -04:00
CreatePackager.xsl	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GATK-Picard.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GATKEngine.xml	Changing packaging system path for GATK-only Tribble codecs.	2011-09-26 14:58:19 -04:00
GenomeAnalysisTK.xml	Moving AnalyzeAnnotations into the archive because it has outlived its usefulness.	2011-07-02 10:39:53 -04:00
PicardPrivate.xml	Using picard implementations for accessing aggregation directories.	2011-07-18 21:49:03 -04:00
Queue.xml	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00