gatk3的最后一个经典版本3.8

Eric Banks ef95757311 Fix MD5 because of a need to fix a busted bam file in our validation directory (it used the wrong quality score encoding...)		2012-12-03 21:46:46 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Fix MD5 because of a need to fix a busted bam file in our validation directory (it used the wrong quality score encoding...)	2012-12-03 21:46:46 -05:00
public	Added quick check for creation of bad BAQ values associated with badly encoded base qualities; hopefully this can help us debug the non-reproducible issue seen by many users.	2012-11-28 13:26:31 -05:00
settings	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refuse to package the GATK from a non-clean working directory	2012-11-02 19:11:24 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00