gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk
Eric Banks ef87b18e09 In retrospect, it wasn't a good idea to have FisherStrand handle reduced reads since they are always on the forward strand. For now, FS ignores reduced reads but I've added a note (and JIRA) to make this work once the RR het compression is enabled (since we will have directionality in reads then). 2012-12-05 02:00:35 -05:00
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downsampling Fixes for bugs uncovered by unit tests 2012-11-06 16:07:40 -08:00
walkers In retrospect, it wasn't a good idea to have FisherStrand handle reduced reads since they are always on the forward strand. For now, FS ignores reduced reads but I've added a note (and JIRA) to make this work once the RR het compression is enabled (since we will have directionality in reads then). 2012-12-05 02:00:35 -05:00