gatk-3.8/java
delangel ef7454a241 Minor improvements to indel genotyper:
a) Ability to specify haplotype size from command line
b) Expand reference context  window so we can form haplotypes for longer indel events.
c) small bug fix in temp output writer (to be removed once I can emit vcfs)



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4212 348d0f76-0448-11de-a6fe-93d51630548a
2010-09-03 22:52:08 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Minor improvements to indel genotyper: 2010-09-03 22:52:08 +00:00
test VR integration tests are longer but much more useful. 2010-09-03 15:50:19 +00:00