Mark DePristo e445c71161 LIBS optimization for adapter clipping ... -- GATKSAMRecords now cache the result of the getAdapterBoundary, allowing us to avoid repeating a lot of work in LIBS -- Added unittests to cover adapter clipping		2013-01-25 16:05:17 -05:00
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ActivityProfileStateUnitTest.java	Restructure ActivityProfiler into root class ActivityProfile and derived class BandPassActivityProfile	2013-01-23 13:45:21 -05:00
ActivityProfileUnitTest.java	LIBS optimization for adapter clipping	2013-01-25 16:05:17 -05:00
BandPassActivityProfileUnitTest.java	Adaptively compute the band pass filter from the sigma, up to a maximum size of 50 bp	2013-01-24 13:47:59 -05:00