Ryan Poplin 10b23bfb04 Adding Axiom_Exome_Plus.sites_only.all_populations.poly.vcf to the resource bundle because it is used in the v3.3 best practices		2015-01-05 14:52:31 -05:00
..
VectorPairHMM	Add HaplotypeCaller argument so integration tests can specify the hardware dependent PairHMM sub-implementation	2014-11-25 21:53:53 -05:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
external-example	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00
gatk-engine	Catch RuntimeException and add the bad file name to the newly thown exception	2014-11-05 09:14:33 -05:00
gatk-queue	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00
gatk-queue-extensions-generator	Split all imports of tools|engine from utils, and all tools from engine.	2014-10-24 20:59:46 +08:00
gatk-queue-extensions-public	Adding Axiom_Exome_Plus.sites_only.all_populations.poly.vcf to the resource bundle because it is used in the v3.3 best practices	2015-01-05 14:52:31 -05:00
gatk-root	Merge pull request #768 from broadinstitute/pd_bcf_failures	2014-10-31 15:30:56 -04:00
gatk-tools-public	Fix mmultiallelic info field annotation for VariantAnnotator	2014-12-17 22:21:00 -05:00
gatk-utils	Merge pull request #794 from broadinstitute/rhl_read_backed_phasing	2015-01-05 09:47:25 -05:00
gsalib	Updated gsalib version to 2.1 for resubmitting with updated license to CRAN	2014-12-09 17:07:48 -05:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Split all imports of tools|engine from utils, and all tools from engine.	2014-10-24 20:59:46 +08:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
repo	Revved Picard/htsjdk	2014-10-30 21:16:25 -04:00
src/main	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.4 development	2014-10-23 22:31:44 -04:00