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gatk-3.8/public/java/src/org/broadinstitute/sting/gatk/executive
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Mark DePristo 12f4c6307e AutoFormattingTime cleanup and complete unittests 
-- Underlying system now uses long nano times to be more consistent with standard java practice
-- Updated a few places in the code that were converting from nanoseconds to double seconds to use the new nanoseconds interface directly
-- Bringing us to 100% test coverage with clover with AutoFormattingTimeUnitTest
 		2013-01-02 11:29:25 -05:00
..
Accumulator.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
HierarchicalMicroScheduler.java Add GATK-wide command line argument to control the maximum runtime allowed for the GATK 2012-10-26 13:18:34 -04:00
HierarchicalMicroSchedulerMBean.java Refactor TraversalEngine to extract the progress meter functions 2012-09-10 20:14:13 -04:00
LinearMicroScheduler.java Add GATK-wide command line argument to control the maximum runtime allowed for the GATK 2012-10-26 13:18:34 -04:00
MicroScheduler.java AutoFormattingTime cleanup and complete unittests 2013-01-02 11:29:25 -05:00
MicroSchedulerMBean.java Refactor TraversalEngine to extract the progress meter functions 2012-09-10 20:14:13 -04:00
OutputMergeTask.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
ReduceTree.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
ShardTraverser.java When writing the initial commit for nt + nct I realized this class was really just a ThreadGroupOutputTracker 2012-09-24 14:15:36 -04:00
TreeReducer.java Killing off some FindBugs 'Realiability' issues 2012-08-16 14:00:48 -04:00
WindowMaker.java Use the new downsampling implementation by default 2012-12-10 09:44:50 -05:00
package-info.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00