gatk3的最后一个经典版本3.8

Eric Banks ee7d85c6e6 Move around the DiploidGenotype classes (so it can be used by the GATKPaperGenotyper)		2013-01-08 15:53:11 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Move around the DiploidGenotype classes (so it can be used by the GATKPaperGenotyper)	2013-01-08 15:53:11 -05:00
public	Okay, all public->protected dependencies are gone except for the BQSR arguments. I'll need to think through this but should be able to make that work too.	2013-01-08 15:46:32 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Re-enabling contracts in tests in build.xml	2013-01-02 11:29:25 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00