hanna ee3f2eb1d0 Don't output traversal reduce result in the logger. In many cases, the reduce ... result is tangential to the product of the analysis and having the logger always emit it can confuse the output (such as in the new reduceByInterval DepthOfCoverage walker). If users want to emit it, they can choose not override onTraversalDone, or override onTraversalDone and write results to the output stream / logger / whatever their choice. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3422 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-23 22:41:43 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Don't output traversal reduce result in the logger. In many cases, the reduce	2010-05-23 22:41:43 +00:00
test/org/broadinstitute/sting	a) Made HaplotypeScore default annotation. This changed several integration tests, whose MD5 is now updated.	2010-05-21 22:25:17 +00:00