611 lines
19 KiB
YAML
611 lines
19 KiB
YAML
{
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project: {
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name: UGMemoryTests,
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referenceFile: /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta,
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dbsnpFile: /humgen/gsa-hpprojects/GATK/data/dbsnp_129_b37.rod,
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intervalList: /humgen/gsa-hpprojects/GATK/data/whole_exome_agilent_1.1_refseq_plus_3_boosters.Homo_sapiens_assembly19.targets.chr1.interval_list
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},
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samples: [
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{
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id: C315_32742,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/32742/v3/32742.bam }
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},
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{
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id: C315_28-0154,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/28-0154/v3/28-0154.bam }
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},
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{
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id: C315_A08694,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/A08694/v1/A08694.bam }
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},
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{
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id: C315_9218,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/9218/v3/9218.bam }
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},
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{
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id: C315_42284,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/42284/v2/42284.bam }
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id: C315_395607-59,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/395607-59/v1/395607-59.bam }
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},
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{
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id: C315_12751,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/12751/v2/12751.bam }
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},
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{
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id: C315_A02027,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/A02027/v5/A02027.bam }
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id: C315_389822-58,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/389822-58/v1/389822-58.bam }
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},
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id: C315_15899,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/15899/v1/15899.bam }
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},
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id: C315_47661,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/47661/v3/47661.bam }
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id: C315_209541-66,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/209541-66/v1/209541-66.bam }
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},
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{
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id: C315_49535,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/49535/v2/49535.bam }
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{
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id: C315_496560-33,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/496560-33/v1/496560-33.bam }
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},
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{
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id: C315_4039,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/4039/v2/4039.bam }
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},
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{
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id: C315_492677-36,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/492677-36/v1/492677-36.bam }
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},
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{
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id: C315_40716,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/40716/v2/40716.bam }
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},
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{
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id: C315_38201,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/38201/v2/38201.bam }
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},
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{
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id: C315_500277-48,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/500277-48/v1/500277-48.bam }
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},
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{
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id: C315_22866,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/22866/v1/22866.bam }
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},
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{
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id: C315_507365-44,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/507365-44/v2/507365-44.bam }
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},
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{
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id: C315_407001-34,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/407001-34/v1/407001-34.bam }
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},
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{
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id: C315_51248,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/51248/v1/51248.bam }
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},
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{
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id: C315_427532-47,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/427532-47/v1/427532-47.bam }
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},
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{
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id: C315_6767,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/6767/v2/6767.bam }
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},
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{
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id: C315_52221,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/52221/v2/52221.bam }
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},
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{
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id: C315_14779,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/14779/v1/14779.bam }
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},
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{
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id: C315_19309,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/19309/v1/19309.bam }
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},
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{
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id: C315_497395-47,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/497395-47/v1/497395-47.bam }
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},
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{
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id: C315_50333,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/50333/v1/50333.bam }
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},
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{
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id: C315_472444-60,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/472444-60/v2/472444-60.bam }
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},
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{
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id: C315_548668-34,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/548668-34/v1/548668-34.bam }
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},
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{
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id: C315_335840-68,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/335840-68/v1/335840-68.bam }
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},
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{
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id: C315_265276-65,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/265276-65/v3/265276-65.bam }
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},
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{
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id: C315_17480,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/17480/v1/17480.bam }
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},
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{
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id: C315_426521-75,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/426521-75/v1/426521-75.bam }
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},
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{
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id: C315_222034-64,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/222034-64/v1/222034-64.bam }
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},
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{
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id: C315_pcath980626-1,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/pcath980626-1/v3/pcath980626-1.bam }
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},
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{
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id: C315_527830-33,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/527830-33/v1/527830-33.bam }
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},
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{
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id: C315_421826-53,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/421826-53/v1/421826-53.bam }
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{
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id: C315_217094-74,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/217094-74/v3/217094-74.bam }
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},
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{
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id: C315_562474-57,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/562474-57/v1/562474-57.bam }
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},
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{
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id: C315_434049-48,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/434049-48/v1/434049-48.bam }
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},
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{
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id: C315_360268-49,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/360268-49/v2/360268-49.bam }
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},
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{
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id: C315_528492-65,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/528492-65/v1/528492-65.bam }
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},
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{
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id: C315_206691-53,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/206691-53/v1/206691-53.bam }
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},
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{
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id: C315_19156,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/19156/v1/19156.bam }
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},
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id: C315_364827-70,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/364827-70/v1/364827-70.bam }
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},
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{
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id: C315_544273-42,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/544273-42/v1/544273-42.bam }
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},
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{
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id: C315_41645,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/41645/v1/41645.bam }
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},
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{
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id: C315_39048,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/39048/v1/39048.bam }
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},
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{
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id: C315_14007,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/14007/v2/14007.bam }
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},
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{
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id: C315_395725-33,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/395725-33/v1/395725-33.bam }
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},
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{
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id: C315_42291,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/42291/v1/42291.bam }
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},
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{
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id: C315_31981,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/31981/v2/31981.bam }
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},
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{
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id: C315_87A84DD1,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/87A84DD1/v2/87A84DD1.bam }
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},
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{
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id: C315_54393,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/54393/v1/54393.bam }
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},
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{
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id: C315_15974,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/15974/v1/15974.bam }
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},
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{
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id: C315_543091-49,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/543091-49/v2/543091-49.bam }
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},
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{
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id: C315_283916-44,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/283916-44/v1/283916-44.bam }
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},
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{
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id: C315_49900,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/49900/v2/49900.bam }
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},
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{
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id: C315_460187-33,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/460187-33/v2/460187-33.bam }
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},
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{
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id: C315_48019,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/48019/v2/48019.bam }
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},
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{
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id: C315_329427-69,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/329427-69/v1/329427-69.bam }
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},
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{
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id: C315_A06518,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/A06518/v1/A06518.bam }
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},
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{
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id: C315_35484,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/35484/v5/35484.bam }
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},
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{
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id: C315_325920-37,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/325920-37/v1/325920-37.bam }
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},
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{
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id: C315_25775,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/25775/v1/25775.bam }
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},
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{
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id: C315_202228-58,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/202228-58/v1/202228-58.bam }
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id: C315_542914-48,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/542914-48/v3/542914-48.bam }
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},
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{
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id: C315_36047,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/36047/v2/36047.bam }
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id: C315_232846-59,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/232846-59/v1/232846-59.bam }
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},
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{
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id: C315_5760,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/5760/v1/5760.bam }
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id: C315_348907-53,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/348907-53/v1/348907-53.bam }
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{
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id: C315_8891,
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bamFiles: { recalibrated: /seq/picard_aggregation/C315/8891/v2/8891.bam }
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id: C338_00164219,
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00164219/v3/00164219.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00339745/v2/00339745.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00339753/v2/00339753.bam }
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id: C338_00347320,
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00347320/v1/00347320.bam }
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{
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00341953/v2/00341953.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00347335/v2/00347335.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00347323/v2/00347323.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00313755/v2/00313755.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00344108/v1/00344108.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00313306/v1/00313306.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00341959/v3/00341959.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00344030/v3/00344030.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00344099/v3/00344099.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00339767/v2/00339767.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00347317/v3/00347317.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00338716/v2/00338716.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00314085/v2/00314085.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00339707/v2/00339707.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00342149/v2/00342149.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00339680/v3/00339680.bam }
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id: C338_00314089,
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00314089/v1/00314089.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00347305/v3/00347305.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00347299/v2/00347299.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00314042/v1/00314042.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00313624/v2/00313624.bam }
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bamFiles: { recalibrated: /seq/picard_aggregation/C338/00347929/v2/00347929.bam }
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