hanna ee2ec7ced9 Fix off-by-one error in original implementation of read sharding. Tested by ... awking output of BamToFastq vs. samtools until the outputs matched exactly. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2945 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-06 18:52:53 +00:00
..
annotator	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
concordance	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
fasta	Fix off-by-one error in original implementation of read sharding. Tested by	2010-03-06 18:52:53 +00:00
filters	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
genotyper	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
indels	Various improvements to plink, variant context, and VCF code.	2010-03-04 17:58:01 +00:00
recalibration	Removing debug statement. oops.	2010-02-19 15:26:22 +00:00
varianteval	Reverting	2010-02-05 15:57:09 +00:00
DepthOfCoverageIntegrationTest.java	Fix for accumulator exception when running reduce by interval walkers without	2010-03-05 01:04:08 +00:00
PileupWalkerIntegrationTest.java	Now that we changed how deletions are represented, got to update MD5...	2009-12-30 22:00:58 +00:00
PrintReadsWalkerTest.java	adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come.	2010-03-03 15:56:44 +00:00