ebanks ee0e833616 Some significant changes to the annotator: ... 1. Annotations can now be "decorated" with any arbitrary interface description - not just standard or experimental. 2. Users can now not only specify specific annotations to use, but also the interface names from #1. Any number of them can be specified, e.g. -G Standard -G Experimental -A RankSumTest. 3. These same arguments can be used with the Unified Genotyper for when it calls into the Annotator. 4. There are now two types of annotations: those that are applied to the INFO field and those that are applied to specific genotypes (the FORMAT field) in the VCF (however, I haven't implemented any of these latter annotations just yet; coming soon). git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3029 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-18 05:38:32 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Some significant changes to the annotator:	2010-03-18 05:38:32 +00:00
test/org/broadinstitute/sting	Some significant changes to the annotator:	2010-03-18 05:38:32 +00:00