Mauricio Carneiro ed55182a4c Removing Broad specific paths from parameters and making them required. This should make it unambiguous for people inside and outside the Broad to use the DataProcessingPipeline (as per request in the GetSatisfaction)		2011-07-16 00:09:00 -04:00
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examples	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Removing Broad specific paths from parameters and making them required. This should make it unambiguous for people inside and outside the Broad to use the DataProcessingPipeline (as per request in the GetSatisfaction)	2011-07-16 00:09:00 -04:00
GATKResourcesBundle.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00
MethodsDevelopmentCallingPipeline.scala	Making the outputDir optional. Default = ./	2011-07-05 16:30:41 -04:00
RecalibrateBaseQualities.scala	changing the output directory names for Analyze Covariates	2011-07-15 19:39:42 -04:00
StandardVariantEvaluation.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00