gatk3的最后一个经典版本3.8

Roger Zurawicki ecfabd134f Created a non destructive trim method for variable sites ... The trimToVariableSite now creates a new slidingReads (hard copy) that uses the SAMRecord's reference. Renamed compressWindow to addToConsensus		2011-08-18 10:41:12 -04:00
public	Renamed softUnclipped functions to refCoord*	2011-08-16 18:56:28 -04:00
settings	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Fixing the javadoc/scaladoc targets in build.xml	2011-08-11 19:24:41 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00