Mark DePristo ec935f76f6 Initial implementation and tests for IndependentAllelesDiploidExactAFCalc ... -- This model separates each of N alt alleles, combines the genotype likelihoods into the X/X, X/N_i, and N_i/N_i biallelic case, and runs the exact model on each independently to handle the multi-allelic case. This is very fast, scaling at O(n.alt.alleles x n.samples) -- Many outstanding TODOs in order to truly pass unit tests -- Added proper unit tests for the pNonRef calculation, which all of the models pass		2012-10-15 07:53:55 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Initial implementation and tests for IndependentAllelesDiploidExactAFCalc	2012-10-15 07:53:55 -04:00
test	Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable	2012-10-12 00:48:42 -04:00