Mark DePristo ec935f76f6 Initial implementation and tests for IndependentAllelesDiploidExactAFCalc ... -- This model separates each of N alt alleles, combines the genotype likelihoods into the X/X, X/N_i, and N_i/N_i biallelic case, and runs the exact model on each independently to handle the multi-allelic case. This is very fast, scaling at O(n.alt.alleles x n.samples) -- Many outstanding TODOs in order to truly pass unit tests -- Added proper unit tests for the pNonRef calculation, which all of the models pass		2012-10-15 07:53:55 -04:00
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src/org/broadinstitute/sting	Initial implementation and tests for IndependentAllelesDiploidExactAFCalc	2012-10-15 07:53:55 -04:00
test/org/broadinstitute/sting/gatk/walkers	Initial implementation and tests for IndependentAllelesDiploidExactAFCalc	2012-10-15 07:53:55 -04:00