gatk3的最后一个经典版本3.8

Mark DePristo ec935f76f6 Initial implementation and tests for IndependentAllelesDiploidExactAFCalc ... -- This model separates each of N alt alleles, combines the genotype likelihoods into the X/X, X/N_i, and N_i/N_i biallelic case, and runs the exact model on each independently to handle the multi-allelic case. This is very fast, scaling at O(n.alt.alleles x n.samples) -- Many outstanding TODOs in order to truly pass unit tests -- Added proper unit tests for the pNonRef calculation, which all of the models pass		2012-10-15 07:53:55 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Initial implementation and tests for IndependentAllelesDiploidExactAFCalc	2012-10-15 07:53:55 -04:00
public	Initial implementation and tests for IndependentAllelesDiploidExactAFCalc	2012-10-15 07:53:55 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00