Mark DePristo 071fd67d55 Merge pull request #193 from broadinstitute/eb_contamination_fixing_for_reduced_reads ... Eb contamination fixing for reduced reads		2013-04-26 09:48:45 -07:00
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alignment	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
commandline	Optimization to method for getting values in ArgumentMatch	2013-04-04 23:30:47 -04:00
gatk	Merge pull request #193 from broadinstitute/eb_contamination_fixing_for_reduced_reads	2013-04-26 09:48:45 -07:00
jna	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
queue	change the default VCFs gatherer of the GATK (not just the UG)	2013-01-18 15:03:12 -05:00
tools	Created ListAnnotations utility (extends CommandLineProgram)	2013-03-20 06:15:27 -04:00
utils	Extended the allele-biased down-sampling functionality to handle reduced reads.	2013-04-26 11:23:17 -04:00