gatk3的最后一个经典版本3.8

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Ryan Poplin ec7c4ea2ba Unfortunately dangling tail recovery is dangerous in exome data. Turning it off by default for now. -- disabling HC+VA integration test because, as noted in the comments, it keeps switching PairHMM implementations and giving different results at a particular site used in that particular test		2014-05-23 14:33:44 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Unfortunately dangling tail recovery is dangerous in exome data. Turning it off by default for now.	2014-05-23 14:33:44 -04:00
public	Fix for SW to make double comparisons with a tolerance	2014-05-23 01:48:48 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00

The Genome Analysis Toolkit