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annotator
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Made the necessary changes to get SnpEff support working with the new rodbinding system.
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2011-08-08 23:29:39 -04:00 |
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beagle
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--variants throughout integrationtests
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2011-08-02 20:28:47 -04:00 |
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coverage
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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diffengine
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GATKReport v0.2:
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2011-08-03 00:24:47 -04:00 |
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fasta
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More updates to be consistent with the new rod syntax.
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2011-08-09 10:11:37 -04:00 |
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filters
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Need to rename the integration test argument -mask to -maskName
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2011-08-07 13:32:26 -04:00 |
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genotyper
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More updates to be consistent with the new rod syntax.
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2011-08-09 10:11:37 -04:00 |
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indels
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More updates to be consistent with the new rod syntax.
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2011-08-09 10:11:37 -04:00 |
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phasing
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Single positional arguments are now treated as names unless they actually match a tribble feature
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2011-08-08 19:26:27 -04:00 |
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qc
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Continuing progress towards RodBinding 1.0
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2011-08-03 17:19:28 -04:00 |
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recalibration
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Reverting a bunch of bad -B type drops
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2011-08-08 16:57:38 -04:00 |
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validation
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Continuing progress towards RodBinding 1.0
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2011-08-03 17:19:28 -04:00 |
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varianteval
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Reverting a bunch of bad -B type drops
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2011-08-08 16:57:38 -04:00 |
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variantrecalibration
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Reverting a bunch of bad -B type drops
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2011-08-08 16:57:38 -04:00 |
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variantutils
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More updates to be consistent with the new rod syntax.
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2011-08-09 10:11:37 -04:00 |
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BAQIntegrationTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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ClipReadsWalkersIntegrationTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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PileupWalkerIntegrationTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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PrintReadsIntegrationTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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PrintReadsWalkerUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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