chartl ec68ae3bc5 Added a filter that will split the read set by a threshold of mapping quality (Request from Jason Flannick) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1812 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-12 20:58:37 +00:00
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alignment	Fixed 'visualization' of reads that didn't match bwa's alignments exactly.	2009-10-08 19:45:30 +00:00
gatk	added method to get normalized posteriors	2009-10-12 02:33:22 +00:00
playground	Added a filter that will split the read set by a threshold of mapping quality (Request from Jason Flannick)	2009-10-12 20:58:37 +00:00
secondarybase	Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests.	2009-09-30 20:37:59 +00:00
utils	Fixes for GSA-201, where enumerated types in command line arguments had to be defined as all uppercase for the system to work.	2009-10-09 18:11:32 +00:00