Mark DePristo ec05ecef60 getAdaptorBoundary returns an int, not an Integer, as this was taking 30% of the allocation effort for LIBS		2013-01-14 16:30:15 -05:00
..
R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	…
chainFiles	…
doc	…
java	getAdaptorBoundary returns an int, not an Integer, as this was taking 30% of the allocation effort for LIBS	2013-01-14 16:30:15 -05:00
keys	…
packages	Remove DepthOfCoverage.java because it is no longer public	2013-01-10 11:45:38 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Licensing update -- batch #2	2013-01-11 13:38:11 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00