hanna ec0261275b Lots of command line argument validation. Catches all common validation problems, including missing required arguments, invalid arguments, and several types of misplaced argument value errors. ... Still pending: - Help system. - Mutually exclusive arguments. - Design includes too many classes per file. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@597 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-05 22:08:00 +00:00
..
cmdLine	Lots of command line argument validation. Catches all common validation problems, including missing required arguments, invalid arguments, and several types of misplaced argument value errors.	2009-05-05 22:08:00 +00:00
fasta	Introduce new index-based fasta reader. Clean up MicroManager code, pushing necessary code back into TraversalEngine.	2009-04-24 19:40:21 +00:00
threading	Break out some of the weird inner classes out of the HierachicalMicroScheduler.	2009-04-29 21:07:07 +00:00
GenomeLocTest.java	Changed the assert code in the genome loc to throw exceptions, and deleted a function no one seems to be using.	2009-04-30 13:54:51 +00:00
MathUtilsTest.java	A more thorough test for multinomialProbability.	2009-05-01 06:27:05 +00:00
RefHangerTest.java	JUnit test for RefHanger	2009-05-01 20:11:14 +00:00