gatk3的最后一个经典版本3.8

hanna ec0261275b Lots of command line argument validation. Catches all common validation problems, including missing required arguments, invalid arguments, and several types of misplaced argument value errors. ... Still pending: - Help system. - Mutually exclusive arguments. - Design includes too many classes per file. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@597 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-05 22:08:00 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
java	Lots of command line argument validation. Catches all common validation problems, including missing required arguments, invalid arguments, and several types of misplaced argument value errors.	2009-05-05 22:08:00 +00:00
python	Better validation scripts and data	2009-04-29 17:40:07 +00:00
settings	Bumped sam-jdk version to fix bug unzipping bam files.	2009-04-28 20:02:05 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Better validation scripts and data	2009-04-29 17:40:07 +00:00
build.xml	Not sure why junit is so excited about running inner classes with no @Tests.	2009-05-05 21:56:34 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00