Eric Banks ebd5404124 Fixed the add functionality of GenomeLocSortedSet. ... * Fixed GenomeLocSortedSet.add() to ensure that overlapping intervals are detected and an exception is thrown. * Fixed GenomeLocSortedSet.addRegion() by merging it with the add() method; it now produces sorted inputs in all cases. * Cleaned up duplicated code throughout the engine to create a list of intervals over all contigs. * Added more unit tests for add functionality of GLSS. * Resolves GSA-775.		2013-02-28 23:31:00 -05:00
..
net/sf	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
org/broadinstitute/sting	Fixed the add functionality of GenomeLocSortedSet.	2013-02-28 23:31:00 -05:00