Eric Banks ebd5404124 Fixed the add functionality of GenomeLocSortedSet. ... * Fixed GenomeLocSortedSet.add() to ensure that overlapping intervals are detected and an exception is thrown. * Fixed GenomeLocSortedSet.addRegion() by merging it with the add() method; it now produces sorted inputs in all cases. * Cleaned up duplicated code throughout the engine to create a list of intervals over all contigs. * Added more unit tests for add functionality of GLSS. * Resolves GSA-775.		2013-02-28 23:31:00 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Fixed the add functionality of GenomeLocSortedSet.	2013-02-28 23:31:00 -05:00
test	Fixed the add functionality of GenomeLocSortedSet.	2013-02-28 23:31:00 -05:00