gatk-3.8

History

Khalid Shakir c3c7f17d90 Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000. Instead of creating a supposed network temporary directory locally which then fails when remote nodes try to access the non-existant dir, now checking to see if they network directory is available and throwing a SkipException to bypass the test when it cannot be run. TODO: Throw similar SkipExceptions when fastas are not available. Right now instead of skipping the test or failing fast the REQUIRE_NETWORK_CONNECTION=false means that the errors popup later when the networked fastas aren't found.	2012-05-29 11:18:22 -04:00
..
net/sf	GATK tests use public/testdata not /humgen/ as much as possible	2012-05-24 10:58:58 -04:00
org/broadinstitute/sting	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00

Khalid Shakir c3c7f17d90 Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.

Instead of creating a supposed network temporary directory locally which then fails when remote nodes try to access the non-existant dir, now checking to see if they network directory is available and throwing a SkipException to bypass the test when it cannot be run.
TODO: Throw similar SkipExceptions when fastas are not available. Right now instead of skipping the test or failing fast the REQUIRE_NETWORK_CONNECTION=false means that the errors popup later when the networked fastas aren't found.

2012-05-29 11:18:22 -04:00

net/sf

GATK tests use public/testdata not /humgen/ as much as possible

2012-05-24 10:58:58 -04:00

org/broadinstitute/sting

Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.

2012-05-29 11:18:22 -04:00