gatk3的最后一个经典版本3.8

Ryan Poplin ebc3ff680f Bug fix for CalibrateGenotypeLikelihoods. There is no overall read group when in external likelihoods mode. Added integration test for external likelihoods mode.		2012-05-29 15:50:00 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	build.xml now copies report files to ~/private_html for convenient viewing	2012-05-28 10:22:09 -04:00
ivy.xml	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00