Mauricio Carneiro eb6308a0e4 General DiagnoseTargets documentation cleanup ... * remove interval statistic low_median_coverage -- it is already captured by low coverage and coverage gaps. * add gatkdocs to all the parameters * clean up the logic on callable status a bit (still need to be re-worked into a plugin system) * update integration tests		2013-04-22 23:53:09 -04:00
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java	General DiagnoseTargets documentation cleanup	2013-04-22 23:53:09 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00