Geraldine Van der Auwera 95a9ed853d Made some documentation updates & fixes ... --Mostly doc block tweaks --Added @DocumentedGATKFeature to some walkers that were undocumented because they were ending up in "uncategorized". Very important for GSA: if a walker is in public or protected, it HAS to be properly tagged-in. If it's not ready for the public, it should be in private.		2013-03-20 06:15:20 -04:00
..
covariates	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
BQSRReadTransformer.java	Added the functionality to impose a relative ordering on ReadTransformers in the GATK engine.	2013-03-06 12:38:59 -05:00
BaseRecalibration.java	Cleanup and unit tests for QualityUtils	2013-02-16 07:31:37 -08:00
QualQuantizer.java	Cleanup and unit tests for QualityUtils	2013-02-16 07:31:37 -08:00
QuantizationInfo.java	Cleanup and unit tests for QualityUtils	2013-02-16 07:31:37 -08:00
ReadCovariates.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
RecalDatum.java	Cleanup and unit tests for QualityUtils	2013-02-16 07:31:37 -08:00
RecalDatumNode.java	Move some VCF/VariantContext methods back to the GATK based on feedback	2013-01-29 16:56:55 -05:00
RecalUtils.java	Made some documentation updates & fixes	2013-03-20 06:15:20 -04:00
RecalibrationReport.java	Cleanup and unit tests for QualityUtils	2013-02-16 07:31:37 -08:00
RecalibrationTables.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00