Ryan Poplin c15453542e Merge pull request #124 from broadinstitute/md_hc_lowmapq_read_filter ... HC now by default only uses reads with MAPQ >= 20 for assembly and calli...		2013-03-21 12:00:28 -07:00
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java	Merge pull request #124 from broadinstitute/md_hc_lowmapq_read_filter	2013-03-21 12:00:28 -07:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00