aaron eafdd047f7 GLF to variant context. Added some methods in GLF to aid testing; and added a test that reads GLF, converts to VC, writes GLF and reads back to compare. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3062 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-23 03:43:25 +00:00
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alignment	oops - didn't mean to check this in	2010-03-02 20:28:22 +00:00
gatk	GLF to variant context. Added some methods in GLF to aid testing; and added a test that reads GLF, converts to VC, writes GLF and reads back to compare.	2010-03-23 03:43:25 +00:00
oneoffprojects/walkers	Fixing broken integration tests	2010-03-14 23:18:49 +00:00
playground	clean-up before annotating VariantEval2 for output.	2010-03-22 07:39:20 +00:00
utils	Unit tests for -XL arguments; expt. annotation calculating the GC content within 100 bp of the current SNP	2010-03-14 21:08:14 +00:00
BaseTest.java	added root GATKData variable	2010-02-12 15:25:34 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	another test-with-multiple outputs fix	2010-03-04 22:46:15 +00:00