gatk3的最后一个经典版本3.8

David Roazen eae2d019cf Refuse to package the GATK from a non-clean working directory ... Packaging from a non-clean working directory can result in an incorrect jar. Now that we have external collaborators packaging and distributing the GATK, not enforcing the clean requirement has become far too dangerous. At the same time, invoking "clean" automatically through a direct dependency would also be dangerous -- instead, it's better to error out if a packaging target is invoked from a non-clean working dir.		2012-11-02 19:11:24 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Moving UG integration tests to protected since they use protected-only contamination filtering. Adding a new UGLite integration test to confirm that contamination filtering is ignored in lite.	2012-10-31 21:28:07 -04:00
public	Don't run these tests if not GAKT lite	2012-10-31 22:56:38 -04:00
settings	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
.gitignore	adding some directories to gitignore	2012-10-10 13:26:13 -04:00
build.xml	Refuse to package the GATK from a non-clean working directory	2012-11-02 19:11:24 -04:00
intellij_example.tar.bz2	Adding intellij example files to the repo	2012-10-15 13:49:09 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00