Mark DePristo 1aa4b12ff0 Reduced the number of combinations being tested here, which was overkill		2011-09-01 10:42:43 -04:00
..
R	UnitTests for RScript	2011-08-27 10:50:05 -04:00
baq	Removed a public -> private dependency in our test suite.	2011-08-12 17:29:10 -04:00
bed	Fixing broken paths to the testdata directory throughout the codebase.	2011-06-29 17:36:47 -04:00
codecs	Renaming the HapMap codec and feature to RawHapMap so that we don't get esoteric errors when trying to bind a rod with the name 'hapmap' (since it was also a feature).	2011-08-12 11:11:56 -04:00
collections	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
fasta	Reduced the number of combinations being tested here, which was overkill	2011-09-01 10:42:43 -04:00
genotype	Darn, forgot to update unit tests.	2011-08-03 12:31:08 -04:00
interval	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
pileup	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
report	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
sam	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
text	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
threading	Removed GATK use of distributed parallelism framework.	2011-07-20 16:26:09 -04:00
variantcontext	Fixing up and refactoring usage of indel categories. On a variant context, isInsertion() and isDeletion() are now removed because behavior before was wrong in case of multiallelic sites. Now, methods isSimpleInsertion() and isSimpleDeletion() will return true only if sites are biallelic. For multiallelic sites, isComplex() will return true in all cases.	2011-08-18 16:17:38 -04:00
BaseUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenomeLocParserUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenomeLocSortedSetUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenomeLocUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
MWUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
MathUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PathUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ReadUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ReservoirDownsamplerUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
SimpleTimerUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
UtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00