jmaguire ea7e737441 Two new annotations: ... 1. LowMQ: fraction of reads at MQ=0 or MQ<=10. 2. Alignability: annotate SNPs with Heng's (or anyone else's) alignability mask. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2746 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-29 23:23:00 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Two new annotations:	2010-01-29 23:23:00 +00:00
test/org/broadinstitute/sting	fixed out of date tests. Also, tests uncovered a subtle bug in new implementation that was also fixed	2010-01-29 20:03:48 +00:00