Laura Gauthier 31fc64f82c To address weird case with all hom-refs, but alt allele is present, skip AS_QD for all-ref sites and remove raw annotations whether or not they can be successfully finalized		2016-03-15 09:34:47 -04:00
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VectorPairHMM	Update licenses	2016-03-05 01:09:43 -08:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Updated readme in public/doc to just point to the website	2015-03-12 11:52:48 -04:00
external-example	Update licenses	2016-03-05 01:09:43 -08:00
gatk-engine	Added run-time information to log output	2016-03-11 16:43:03 -05:00
gatk-queue	Update licenses	2016-03-05 01:09:43 -08:00
gatk-queue-extensions-generator	Update licenses	2016-03-05 01:09:43 -08:00
gatk-queue-extensions-public	Update licenses	2016-03-05 01:09:43 -08:00
gatk-root	Removes Dithering from Rank Sum Test	2016-02-29 11:45:27 -05:00
gatk-tools-public	To address weird case with all hom-refs, but alt allele is present, skip AS_QD for all-ref sites and remove raw annotations whether or not they can be successfully finalized	2016-03-15 09:34:47 -04:00
gatk-utils	Update licenses	2016-03-05 01:09:43 -08:00
gsalib	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00
repo	Updated gatk so it compiles on java 8	2015-06-26 15:59:46 -04:00
src/main	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00