Mauricio Carneiro 87e6bea6c1 Adding engine capability to quantize qualities. ... * Added parameter -qq to quantize qualities using a recalibration report * Added options to quantize using the recalibration report quantization levels, new nLevels and no quantization. * Updated BQSR scripts to make use of the new parameters		2012-04-08 21:07:51 -04:00
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net/sf	Fix serious engine bug that could cause reads to be dropped under certain circumstances	2012-02-13 16:25:21 -05:00
org/broadinstitute/sting	Adding engine capability to quantize qualities.	2012-04-08 21:07:51 -04:00