Guillermo del Angel ea01dbf130 Fix to issue encountered when running HaplotypeCaller in GGA mode with data from other 1000G callers. ... In particular, someone produced a tandem repeat site with 57 alt alleles (sic) which made the caller blow up. Inelegant fix is to detect if # of alleles is > our max cached capacity, and if so, emit an informative warning and skip site. -- Added unit test to UG engine to cover this case. -- Commit to posterity private scala script currently used for 1000G indel consensus (still very much subject to changes). GSA-878 #resolve		2013-03-20 14:30:37 -04:00
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gatk/walkers	Fix to issue encountered when running HaplotypeCaller in GGA mode with data from other 1000G callers.	2013-03-20 14:30:37 -04:00
utils	Expanded functionality for writing BAMs from HaplotypeCaller	2013-03-03 12:07:29 -05:00