gatk-3.8/protected/java
Guillermo del Angel ea01dbf130 Fix to issue encountered when running HaplotypeCaller in GGA mode with data from other 1000G callers.
In particular, someone produced a tandem repeat site with 57 alt alleles (sic) which made the caller blow up.
Inelegant fix is to detect if # of alleles is > our max cached capacity, and if so, emit an informative warning and skip site.
-- Added unit test to UG engine to cover this case.
-- Commit to posterity private scala script currently used for 1000G indel consensus (still very much subject to changes).
GSA-878 #resolve
2013-03-20 14:30:37 -04:00
..
src/org/broadinstitute/sting Fix to issue encountered when running HaplotypeCaller in GGA mode with data from other 1000G callers. 2013-03-20 14:30:37 -04:00
test/org/broadinstitute/sting Fix to issue encountered when running HaplotypeCaller in GGA mode with data from other 1000G callers. 2013-03-20 14:30:37 -04:00