Mauricio Carneiro efbfdb64fe Qscript to Downsample and analyze an exome BAM ... this script downsamples an exome BAM several times and makes a coverage distribution analysis (of bases that pass filters) as well as haplotype caller calls with a NA12878 Knowledge Base assessment with comparison against multi-sample calling with the UG. This script was used for the "downsampling the exome" presentation		2013-10-10 14:37:33 -04:00
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R	Something changed with the ggtitle syntax in the latest version of ggplot2.	2013-08-14 14:40:03 -04:00
c	…
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
java	Merged bug fix from Stable into Unstable	2013-10-10 13:01:12 -04:00
keys	…
packages	ValidatingPileup was renamed to CheckPileup	2013-02-15 11:56:19 -05:00
perl	…
scala	Qscript to Downsample and analyze an exome BAM	2013-10-10 14:37:33 -04:00
testdata	Walker to create a fastq file from an interval list	2013-06-29 11:24:16 -04:00