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gatk-3.8/public/java/test/org/broadinstitute/sting
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Mark DePristo e9c22b9aad Final updates to integration tests for BCF2 
-- Fully working version
-- Use -generateShadowBCF to write out foo.bcf as well as foo.vcf anywhere you use -o foo.vcf
-- Moved MedianUnitTest to its proper home in Utils
-- Added reportng to ivy and testng, so build/report/X/html/ is a nicely formatted output for Unit and Integration tests.  From this website it's easy to see md5 diffs, etc.  This is a vastly better way to manage unit and integration test output
 		2012-05-24 10:58:59 -04:00
..
alignment Reinitialize random seed in the bwa bindings from the fixed seed stored in the 2011-07-22 13:41:53 -04:00
commandline Added ability to specify arguments in files via -args/--arg_file 2011-10-24 15:58:34 -04:00
gatk Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00
jna When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter. 2011-12-16 18:09:25 -05:00
utils Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00
BaseTest.java Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00
MD5DB.java Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00
MD5Mismatch.java Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00
StingTextReporter.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
WalkerTest.java Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00