Mauricio Carneiro e89ff063fc GATKSAMRecord refactor ... The GATK engine will now provide a GATKSAMRecord to all tools which incorporates the functionality used by the GATK to the bam file (ReadGroups, Reduced Reads, ...). * No tools should create SAMRecord anymore, use GATKSAMRecord instead *		2011-11-03 15:43:26 -04:00
..
alignment	…
commandline	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
gatk	GATKSAMRecord refactor	2011-11-03 15:43:26 -04:00
jna	…
pipeline	…
utils	GATKSAMRecord refactor	2011-11-03 15:43:26 -04:00
BaseTest.java	merge master	2011-10-25 16:08:39 -04:00
MD5DB.java	Merged bug fix from Stable into Unstable	2011-10-13 18:02:06 -04:00
StingTextReporter.java	…
WalkerTest.java	…