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gatk-3.8/public/java/test/org/broadinstitute/sting
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Mark DePristo e94e6ba101 A UnitTest to ensure that the order of alleles is maintained 
-> A, C, T and A, T, C are different and must be maintained.  The constructors were doing this appropriately, so nothing needed to be changed
 		2011-10-08 08:47:58 -07:00
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alignment Reinitialize random seed in the bwa bindings from the fixed seed stored in the 2011-07-22 13:41:53 -04:00
commandline Bugfix for file that must not exist on disk 2011-08-29 17:00:10 -04:00
gatk Minor fix for merging intervals which hadn't been necessary when only merging from the left to right. Added integration tests to cover the parallelization of RTC. 2011-10-06 22:38:44 -04:00
jna Fixed an integration test which crashed on the out of date LSF DRMAA library when run against the obsolete LSF dotkit instead of .combined_LSF_SGE 2011-09-23 21:03:22 -04:00
pipeline Cleanup of the utils.broad package. 2011-07-01 20:47:03 -04:00
utils A UnitTest to ensure that the order of alleles is maintained 2011-10-08 08:47:58 -07:00
BaseTest.java Made the BaseTest.testDir absolute 2011-10-06 22:33:21 -04:00
MD5DB.java All MD5 mismatches for test are shown 2011-10-04 15:53:52 -07:00
StingTextReporter.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
WalkerTest.java All MD5 mismatches for test are shown 2011-10-04 15:53:52 -07:00